Recent Publications:
  • C.R. Shyu, B. Pang, P.H. Chi, N. Zhao, D. Korkin1, and D. Xu. ProteinDBS v2.0: a web server for global and local protein structure search , Nucleic Acids Res, 2010, 38 Suppl, W53-58 Link
  • P.H. Chi, B. Pang, D. Korkin, and C.R. Shyu. Efficient SCOP fold classification and retrieval using index-based protein substructure alignments, Bioinformatics, 2009, 25(19):2559-2565 Link
  • P.H. Chi. Efficient Protein Tertiary Structure Retrievals And Classifications Using Content Based Comparison Algorithms, Dissertation, Department Of Computer Science, University of Missouri-Columbia, 2007 Link
  • P.H. Chi, C.R. Shyu, and D. Xu. A fast SCOP fold classification system using content-based E-Predict algorithm, BMC Bioinformatics, 2006, Vol. 7:362
  • P.H.Chi , C.R Shyu, Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices, in Proc.of The Fourth Asia Pacific Bioinformatics Conference , Taipei, Taiwan, 2006, pp.49-58.
  • P.H.Chi, G.Scott, and C.R.Shyu, " A fast protein structure retrieval system using image - based distance matrices and multidimensional index ", International Journal of Software Engineering and Knowledge Engineering ,Special Issue on Software and Knowledge Engineering Support in Bioinformatics, Vol.15 (3), 2005, pp .527 - 545.
  • P.H.Chi, G.Scott, C.R Shyu, " A fast protein structure retrieval system using image - based distance matrices and multidimensional index, "in Proc.of IEEE Fourth Symposium on Bioinformatics and Bioengineering , Taichung, Taiwan, 2004. Link
  • C.R.Shyu, P.H.Chi , G.Scott, D.Xu, " ProteinDBS: a real-time retrieval system for protein structure comparison, " Nucleic Acids Research , 2004, vol.32, w572 - 575. Link